Since 1984, the NOAA Fisheries Service's Large Marine Ecosystems (LME) Program has been engaged in the development and implementation of an ecosystem-based approach to support assessment and management of marine resources and habitats. Five linked program modules have been developed for introducing the LME approach: productivity, fish and fisheries, pollution and ecosystem health, socioeconomics, and governance. Taken together, these modules provide time-series measurements used to support actions for the recovery, sustainability, and management of marine resources and habitats. A global effort is underway by NOAA in partnership with the World Conservation Union (IUCN), the UN's Intergovernmental Oceanographic Commission (IOC), and other UN agencies to improve the long-term sustainability of resources and environments of the world's 66 LMEs and linked watersheds. Scientific and technical assistance is provided to developing countries committed to policies and actions for eliminating transboundary environmental and resource-use practices that lead to serious degradation of coastal environments and their linked watersheds, and to losses in biodiversity and food security. LMEs are natural regions of ocean space encompassing coastal waters from river basins and estuaries to the seaward boundary of continental shelves and the outer margins of coastal currents. They are relatively large regions of 200,000 km2 or greater, the natural boundaries of which are based on four ecological criteria: bathymetry, hydrography, productivity, and trophically related populations. The theory, measurement, and modeling relevant to monitoring the changing states of LMEs are imbedded in reports on ecosystems with multiple steady states, and on the pattern formation and spatial diffusion within ecosystems. The concept that critical processes controlling the structure and function of biological communities can best be addressed on a regional basis has been applied to the ocean by using LMEs as the distinct units for marine resources assessment, monitoring, and management.

The physical climate defines a significant portion of the habitats in which biological communities and species reside. It is important to quantify these environmental conditions, and how they have changed, as this will inform future efforts to study many natural systems. We present the results of a statistical summary of the variability in sea surface temperature (SST) time-series data for the waters surrounding Australia, from 1993 to 2013. We partition variation in the SST series into annual trends, inter-annual trends, and a number of components of random variation. We utilise satellite data and validate the statistical summary from these data to summaries of data from long-term monitoringstations and from the global drifter program. The spatially dense results show clear trends that associate with oceanographic features. Noteworthy oceanographic features include: average warming was greatest off southern West Australia and off eastern Tasmania where the warming was around 0.6 C per decade for a twenty year study period, and; insubstantial warming in areas dominated by the East Australian Current but this area did exhibit high levels of inter-annual variability (long-term trend increases and decreases but does not increase on average). The results of the analyses can be directly incorporated into (biogeographic) models that explain variation in biological data where both biological and environmental data are on a fine scale.