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Earth Science | Biological Classification | Protists

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    This dataset comprises the phytoplankton abundance and biovolume estimates as part of a broader sampling program carried out at the Southern Ocean Time Series, a facility within the Integrated Marine Observing System (IMOS). The primary focus is sustained observing of ocean properties and processes important to climate, carbon cycling, and ocean productivity. Regular phytoplankton samples are collected at approximately 14 day intervals (exact intervals and seasonal coverage dependent on deployment length). The moorings are serviced annually, at which time the existing moorings are recovered and new moorings are deployed. Water samples from within the surface mixed-layer are collected at pre-programmed intervals using a Remote Access Sampler, in pairs about 1 hour apart. One sample in each pair is preserved for phytoplankton community composition by microscopy, and the other sample is preserved and used for accompanying chemical analysis of nutrients, total dissolved inorganic carbon (DIC) and alkalinity. Each sample is collected from within the surface mixed-layer at 32 m depth (2010 - 2017) or 5 m depth (2018-current) depending on the design of the mooring surface assembly and instrumentation. Typically a maximum of 24 samples are collected over an annual deployment cycle. The samples collected are analysed for: 1. Community composition / abundance (cells/L) 2. calculated biovolume (um3/L). Protocols for the phytoplankton time-series are described in Eriksen et al (2018), and the annual sample reports for each deployment. Data storage and access is planned to be interoperable with other national and international programs through the IMOS Infrastructure. Station metadata can be found through this resource. Data is available freely via the AODN portal: https://portal.aodn.org.au. As the taxonomic resolution of the data has changed over time, due to continual training, it is important that users refer to the change log tables included in your data download. These will provide information on the validity of the taxa, from what date we have been identifying certain taxa etc. Classification fields may be blank depending on the level to which that taxa has been identified, i.e. if only identified to family, genus and species will be blank.

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    This dataset comprises the phytoplankton abundance and biovolume estimates of a broader sampling program carried out by the Plankton National Reference Station within the Integrated Marine Observing system. Regular monthly phytoplankton samples are undertaken at the stations as part of a larger water sampling program by the Australian National Reference Stations. In total nine stations are sampled regularly around the Australian coastline. Sampling is conducted monthly (Esperance and Ningaloo 3 monthly) off small vessels at each of the nine reference stations. The sampling is an integrated water sample collected with niskin bottles at 10m depth intervals and preserved in lugols solution. The depth of the sample varies at each station. The plankton ecology lab (based in Queensland) will analyse the samples collected for: 1. Community composition / abundance (cells/l) 2. Biovolume (um3/L). Data storage and access is planned to be interoperable with other national and international programs through the IMOS Infrastructure. Station metadata can be found through this resource. Data is available freely via the AODN portal: https://portal.aodn.org.au. As the taxonomic resolution of the data has changed over time, due to continual training, it is important that users refer to the change log tables included in your data download. These will provide information on the validity of the taxa, from what date we have been identifying certain taxa etc. Classification fields may be blank depending on the level to which that taxa has been identified, i.e. if only identified to family, genus and species will be blank.

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    The Interim Register of Marine and Nonmarine Genera (IRMNG) is a provisional (or ‘interim’) compilation of genus names – including species names in many cases – and covers both living and extinct biota into a single system to support taxonomic and other queries dealing with e.g. homonyms, authorities, parent-child relationships, spelling variations and distinctions between marine and non-marine or fossil and recent taxa. Taxonomic names in IRMNG are assigned flags to distinguish between marine vs. non-marine, and extant vs. fossil status; they are also arranged into a simple management hierarchy for navigation purposes, compilation of statistics per taxonomic group and more. Fuzzy matching is also supported (using "Taxamatch") so that a misspelled name can in most instances be reconciled to a correctly spelled name at genus or species rank, where this is held. IRMNG was a project of OBIS Australia designed to assist in the provision of marine species data to OBIS, by permitting the discrimination of marine from nonmarine (and extant from fossil) species records on the basis of the genus name portion of their scientific name (normally, genus + species, or genus + species + infraspecies if applicable). The aim of the project is to (a) assemble as complete a list as possible of the estimated 150,000 extant and 50,000 fossil generic names in current use, plus their possible further 250,000-300,000 synonyms, and (b) flag as many of these as is possible with their marine/nonmarine, and extant/fossil, status. Relevant species lists are also being attached to the "correct" instances of genus names as available. IRMNG was developed and based at CSIRO, Australia from 2006-2014, and from 2016 onwards it is now hosted at VLIZ, Belgium: http://www.irmng.org/